3D structure

PDB id
8P18 (explore in PDB, NAKB, or RNA 3D Hub)
Description
E167K RF2 on E. coli 70S release complex with UGG (Structure III)
Experimental method
ELECTRON MICROSCOPY
Resolution
2.77 Å

Loop

Sequence
UA*UACCGGUGG*CGG
Length
14 nucleotides
Bulged bases
8P18|1|2|U|723
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_8P18_034 not in the Motif Atlas
Homologous match to J3_5J7L_003
Geometric discrepancy: 0.0621
The information below is about J3_5J7L_003
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_11934.4
Basepair signature
cWW-cWW-tWW-cWW-F-F-F-F-F
Number of instances in this motif group
4

Unit IDs

8P18|1|2|U|672
8P18|1|2|A|673
*
8P18|1|2|U|717
8P18|1|2|A|718
8P18|1|2|C|719
8P18|1|2|C|720
8P18|1|2|G|721
8P18|1|2|G|722
8P18|1|2|U|723
8P18|1|2|G|724
8P18|1|2|G|725
*
8P18|1|2|C|732
8P18|1|2|G|733
8P18|1|2|G|734

Current chains

Chain 2
16S rRNA

Nearby chains

Chain B
50S ribosomal protein L2
Chain k
30S ribosomal protein S6
Chain p
Small ribosomal subunit protein uS11
Chain t
Small ribosomal subunit protein uS15
Chain w
Small ribosomal subunit protein bS18
Chain z
Small ribosomal subunit protein bS21

Coloring options:


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