J3_8P2F_006

3D structure

PDB id

8P2F (explore in PDB, NAKB, or RNA 3D Hub)

Description

Staphylococcus aureus 70S ribosome with elongation factor G locked with fusidic acid cyclopentane in post-translocational state

Experimental method

ELECTRON MICROSCOPY

Resolution

2.44 Å

Loop

Sequence

CUAAG*CGCAAAC*GUAG

Length

16 nucleotides

Bulged bases

8P2F|1|A|A|1653

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8P2F_006 not in the Motif Atlas

Homologous match to J3_4WF9_005

Geometric discrepancy: 0.0748

The information below is about J3_4WF9_005

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_68164.1

Basepair signature

cWW-tSH-F-F-tHW-F-F-cWW-cWW-F

Number of instances in this motif group

1

Unit IDs

8P2F|1|A|C|1342
8P2F|1|A|U|1343
8P2F|1|A|A|1344
8P2F|1|A|A|1345
8P2F|1|A|G|1346
*
8P2F|1|A|C|1649
8P2F|1|A|G|1650
8P2F|1|A|C|1651
8P2F|1|A|A|1652
8P2F|1|A|A|1653
8P2F|1|A|A|1654
8P2F|1|A|C|1655
*
8P2F|1|A|G|1664
8P2F|1|A|U|1665
8P2F|1|A|A|1666
8P2F|1|A|G|1667

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain 7

50S ribosomal protein L34