J3_8P2F_009

3D structure

PDB id

8P2F (explore in PDB, NAKB, or RNA 3D Hub)

Description

Staphylococcus aureus 70S ribosome with elongation factor G locked with fusidic acid cyclopentane in post-translocational state

Experimental method

ELECTRON MICROSCOPY

Resolution

2.44 Å

Loop

Sequence

CAUC*GUU*AUUAAAG

Length

14 nucleotides

Bulged bases

8P2F|1|A|A|2545, 8P2F|1|A|U|2546

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8P2F_009 not in the Motif Atlas

Homologous match to J3_4WF9_009

Geometric discrepancy: 0.064

The information below is about J3_4WF9_009

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_32601.6

Basepair signature

cWW-cWH-cWW-tWH-tSS-F-cWW-F

Number of instances in this motif group

4

Unit IDs

8P2F|1|A|C|2544
8P2F|1|A|A|2545
8P2F|1|A|U|2546
8P2F|1|A|C|2547
*
8P2F|1|A|G|2572
8P2F|1|A|U|2573
8P2F|1|A|U|2574
*
8P2F|1|A|A|2588
8P2F|1|A|U|2589
8P2F|1|A|U|2590
8P2F|1|A|A|2591
8P2F|1|A|A|2592
8P2F|1|A|A|2593
8P2F|1|A|G|2594

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain N

50S ribosomal protein L14