J3_8P2F_014
3D structure
- PDB id
- 8P2F (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Staphylococcus aureus 70S ribosome with elongation factor G locked with fusidic acid cyclopentane in post-translocational state
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.44 Å
Loop
- Sequence
- UUUAAUUC*GAAGAACCUUAC*GGCUA
- Length
- 25 nucleotides
- Bulged bases
- 8P2F|1|a|A|984, 8P2F|1|a|G|985
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8P2F_014 not in the Motif Atlas
- Homologous match to J3_4LFB_004
- Geometric discrepancy: 0.1025
- The information below is about J3_4LFB_004
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_88451.1
- Basepair signature
- cWW-tWW-F-F-F-F-F-tSS-cWW-F-F-cWW-F-F-F-F-F-F
- Number of instances in this motif group
- 5
Unit IDs
8P2F|1|a|U|964
8P2F|1|a|U|965
8P2F|1|a|U|966
8P2F|1|a|A|967
8P2F|1|a|A|968
8P2F|1|a|U|969
8P2F|1|a|U|970
8P2F|1|a|C|971
*
8P2F|1|a|G|982
8P2F|1|a|A|983
8P2F|1|a|A|984
8P2F|1|a|G|985
8P2F|1|a|A|986
8P2F|1|a|A|987
8P2F|1|a|C|988
8P2F|1|a|C|989
8P2F|1|a|U|990
8P2F|1|a|U|991
8P2F|1|a|A|992
8P2F|1|a|C|993
*
8P2F|1|a|G|1231
8P2F|1|a|G|1232
8P2F|1|a|C|1233
8P2F|1|a|U|1234
8P2F|1|a|A|1235
Current chains
- Chain a
- 16S ribosomal RNA
Nearby chains
- Chain E
- Elongation factor G
- Chain k
- 30S ribosomal protein S10
- Chain n
- 30S ribosomal protein S13
- Chain o
- 30S ribosomal protein S14 type Z
- Chain t
- 30S ribosomal protein S19
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