J3_8P2F_020
3D structure
- PDB id
- 8P2F (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Staphylococcus aureus 70S ribosome with elongation factor G locked with fusidic acid cyclopentane in post-translocational state
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.44 Å
Loop
- Sequence
- GC*GUGAAAAGCAC*GAGUGAAAUAGAACC
- Length
- 28 nucleotides
- Bulged bases
- 8P2F|1|A|U|549, 8P2F|1|A|A|553
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8P2F_020 not in the Motif Atlas
- Homologous match to J3_4WF9_011
- Geometric discrepancy: 0.257
- The information below is about J3_4WF9_011
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_17917.1
- Basepair signature
- cWW-tWH-cSS-cWW-tSH-tHH-cWW-F-F-tWW-tSS-cSS-tWW-tSH-tWH-cSW-F-tHS-cWW-F
- Number of instances in this motif group
- 9
Unit IDs
8P2F|1|A|G|30
8P2F|1|A|C|31
*
8P2F|1|A|G|520
8P2F|1|A|U|521
8P2F|1|A|G|522
8P2F|1|A|A|523
8P2F|1|A|A|524
8P2F|1|A|A|525
8P2F|1|A|A|526
8P2F|1|A|G|527
8P2F|1|A|C|528
8P2F|1|A|A|529
8P2F|1|A|C|530
*
8P2F|1|A|G|541
8P2F|1|A|A|542
8P2F|1|A|G|543
8P2F|1|A|U|544
8P2F|1|A|G|545
8P2F|1|A|A|546
8P2F|1|A|A|547
8P2F|1|A|A|548
8P2F|1|A|U|549
8P2F|1|A|A|550
8P2F|1|A|G|551
8P2F|1|A|A|552
8P2F|1|A|A|553
8P2F|1|A|C|554
8P2F|1|A|C|555
Current chains
- Chain A
- 23S ribosomal RNA
Nearby chains
- Chain T
- 50S ribosomal protein L20
- Chain V
- 50S ribosomal protein L22
- Chain W
- 50S ribosomal protein L23
- Chain X
- 50S ribosomal protein L24
Coloring options: