J3_8P2F_025

3D structure

PDB id

8P2F (explore in PDB, NAKB, or RNA 3D Hub)

Description

Staphylococcus aureus 70S ribosome with elongation factor G locked with fusidic acid cyclopentane in post-translocational state

Experimental method

ELECTRON MICROSCOPY

Resolution

2.44 Å

Loop

Sequence

GGGACG*CC*GAAAAGC

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8P2F_025 not in the Motif Atlas

Homologous match to J3_9DFE_013

Geometric discrepancy: 0.0581

The information below is about J3_9DFE_013

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_34864.3

Basepair signature

cWW-tSH-tSH-tHH-F-F-cWW-F-cWW

Number of instances in this motif group

4

Unit IDs

8P2F|1|A|G|1468
8P2F|1|A|G|1469
8P2F|1|A|G|1470
8P2F|1|A|A|1471
8P2F|1|A|C|1472
8P2F|1|A|G|1473
*
8P2F|1|A|C|1611
8P2F|1|A|C|1612
*
8P2F|1|A|G|1615
8P2F|1|A|A|1616
8P2F|1|A|A|1617
8P2F|1|A|A|1618
8P2F|1|A|A|1619
8P2F|1|A|G|1620
8P2F|1|A|C|1621

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain G

50S ribosomal protein L2