J3_8P2H_006

3D structure

PDB id

8P2H (explore in PDB, NAKB, or RNA 3D Hub)

Description

Staphylococcus aureus 70S ribosome with elongation factor G locked with fusidic acid with a tRNA in pe/E chimeric state

Experimental method

ELECTRON MICROSCOPY

Resolution

2.49 Å

Loop

Sequence

CUAAG*CGCAAAC*GUAG

Length

16 nucleotides

Bulged bases

8P2H|1|A|A|1653

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8P2H_006 not in the Motif Atlas

Homologous match to J3_4WF9_005

Geometric discrepancy: 0.0696

The information below is about J3_4WF9_005

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_68164.1

Basepair signature

cWW-tSH-F-F-tHW-F-F-cWW-cWW-F

Number of instances in this motif group

1

Unit IDs

8P2H|1|A|C|1342
8P2H|1|A|U|1343
8P2H|1|A|A|1344
8P2H|1|A|A|1345
8P2H|1|A|G|1346
*
8P2H|1|A|C|1649
8P2H|1|A|G|1650
8P2H|1|A|C|1651
8P2H|1|A|A|1652
8P2H|1|A|A|1653
8P2H|1|A|A|1654
8P2H|1|A|C|1655
*
8P2H|1|A|G|1664
8P2H|1|A|U|1665
8P2H|1|A|A|1666
8P2H|1|A|G|1667

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain 7

50S ribosomal protein L34