J3_8P2H_018

3D structure

PDB id

8P2H (explore in PDB, NAKB, or RNA 3D Hub)

Description

Staphylococcus aureus 70S ribosome with elongation factor G locked with fusidic acid with a tRNA in pe/E chimeric state

Experimental method

ELECTRON MICROSCOPY

Resolution

2.49 Å

Loop

Sequence

GC*GUGAAAAG*CC

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8P2H_018 not in the Motif Atlas

Geometric match to J3_5J7L_036

Geometric discrepancy: 0.0837

The information below is about J3_5J7L_036

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_60031.2

Basepair signature

cWW-cWW-cWW-tWH-tSH-F-F

Number of instances in this motif group

7

Unit IDs

8P2H|1|A|G|30
8P2H|1|A|C|31
*
8P2H|1|A|G|520
8P2H|1|A|U|521
8P2H|1|A|G|522
8P2H|1|A|A|523
8P2H|1|A|A|524
8P2H|1|A|A|525
8P2H|1|A|A|526
8P2H|1|A|G|527
*
8P2H|1|A|C|554
8P2H|1|A|C|555

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain T

50S ribosomal protein L20

Chain X

50S ribosomal protein L24