J3_8P2H_022

3D structure

PDB id

8P2H (explore in PDB, NAKB, or RNA 3D Hub)

Description

Staphylococcus aureus 70S ribosome with elongation factor G locked with fusidic acid with a tRNA in pe/E chimeric state

Experimental method

ELECTRON MICROSCOPY

Resolution

2.49 Å

Loop

Sequence

CGAAU*AAUCAAAGAA*UGUAG

Length

20 nucleotides

Bulged bases

8P2H|1|A|A|364

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8P2H_022 not in the Motif Atlas

Homologous match to J3_9DFE_006

Geometric discrepancy: 0.0727

The information below is about J3_9DFE_006

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_46299.2

Basepair signature

cWW-F-F-F-cHH-cWW-tHS-F-cWW-cSW-tHS-cWW

Number of instances in this motif group

3

Unit IDs

8P2H|1|A|C|340
8P2H|1|A|G|341
8P2H|1|A|A|342
8P2H|1|A|A|343
8P2H|1|A|U|344
*
8P2H|1|A|A|359
8P2H|1|A|A|360
8P2H|1|A|U|361
8P2H|1|A|C|362
8P2H|1|A|A|363
8P2H|1|A|A|364
8P2H|1|A|A|365
8P2H|1|A|G|366
8P2H|1|A|A|367
8P2H|1|A|A|368
*
8P2H|1|A|U|380
8P2H|1|A|G|381
8P2H|1|A|U|382
8P2H|1|A|A|383
8P2H|1|A|G|384

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain I

50S ribosomal protein L4

Chain X

50S ribosomal protein L24