J3_8P2H_023

3D structure

PDB id

8P2H (explore in PDB, NAKB, or RNA 3D Hub)

Description

Staphylococcus aureus 70S ribosome with elongation factor G locked with fusidic acid with a tRNA in pe/E chimeric state

Experimental method

ELECTRON MICROSCOPY

Resolution

2.49 Å

Loop

Sequence

UCGGGUC*GAUAA*UA

Length

14 nucleotides

Bulged bases

8P2H|1|A|A|1421

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8P2H_023 not in the Motif Atlas

Homologous match to J3_7A0S_018

Geometric discrepancy: 0.1262

The information below is about J3_7A0S_018

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_31965.2

Basepair signature

cWW-F-cWW-F-F-F-F-F-cWW-F

Number of instances in this motif group

6

Unit IDs

8P2H|1|A|U|1381
8P2H|1|A|C|1382
8P2H|1|A|G|1383
8P2H|1|A|G|1384
8P2H|1|A|G|1385
8P2H|1|A|U|1386
8P2H|1|A|C|1387
*
8P2H|1|A|G|1418
8P2H|1|A|A|1419
8P2H|1|A|U|1420
8P2H|1|A|A|1421
8P2H|1|A|A|1422
*
8P2H|1|A|U|1439
8P2H|1|A|A|1440

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain W

50S ribosomal protein L23