J3_8P2K_015

3D structure

PDB id

8P2K (explore in PDB, NAKB, or RNA 3D Hub)

Description

Ternary complex of translating ribosome, NAC and METAP1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CGAAGUG*CAA*UCUG

Length

14 nucleotides

Bulged bases

8P2K|1|B5|A|2239

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8P2K_015 not in the Motif Atlas

Homologous match to J3_8C3A_006

Geometric discrepancy: 0.0939

The information below is about J3_8C3A_006

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_10154.2

Basepair signature

cWW-tWW-tHW-cWW-tSH-cWW-cWW-F-F

Number of instances in this motif group

3

Unit IDs

8P2K|1|B5|C|2236
8P2K|1|B5|G|2237
8P2K|1|B5|A|2238
8P2K|1|B5|A|2239
8P2K|1|B5|G|2240
8P2K|1|B5|U|2241
8P2K|1|B5|G|2242
*
8P2K|1|B5|C|2648
8P2K|1|B5|A|2649
8P2K|1|B5|A|2650
*
8P2K|1|B5|U|2662
8P2K|1|B5|C|2663
8P2K|1|B5|U|2664
8P2K|1|B5|G|2665

Current chains

Chain B5

28S rRNA

Nearby chains

Chain BR

Ribosomal protein L19

Chain Bg

60S ribosomal protein L34