J3_8P2K_018

3D structure

PDB id

8P2K (explore in PDB, NAKB, or RNA 3D Hub)

Description

Ternary complex of translating ribosome, NAC and METAP1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CGG*CUGAC*GGACAG

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8P2K_018 not in the Motif Atlas

Geometric match to J3_8VTW_006

Geometric discrepancy: 0.1371

The information below is about J3_8VTW_006

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_89368.4

Basepair signature

cWW-tSH-tHW-F-cWW-tHH-cWW

Number of instances in this motif group

3

Unit IDs

8P2K|1|B5|C|3669
8P2K|1|B5|G|3670
8P2K|1|B5|G|3671
*
8P2K|1|B5|C|3802
8P2K|1|B5|U|3803
8P2K|1|B5|G|3804
8P2K|1|B5|A|3805
8P2K|1|B5|C|3806
*
8P2K|1|B5|G|3914
8P2K|1|B5|G|3915
8P2K|1|B5|A|3916
8P2K|1|B5|C|3917
8P2K|1|B5|A|3918
8P2K|1|B5|G|3919

Current chains

Chain B5

28S rRNA

Nearby chains

Chain BA

60S ribosomal protein L8

Chain BG

60S ribosomal protein L7a

Chain BN

Ribosomal protein L15