J3_8P2K_021

3D structure

PDB id

8P2K (explore in PDB, NAKB, or RNA 3D Hub)

Description

Ternary complex of translating ribosome, NAC and METAP1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

UAUC*GUU(OMG)G*CCACUAAUA

Length

18 nucleotides

Bulged bases

8P2K|1|B5|A|4210, 8P2K|1|B5|U|4211

QA status

Modified nucleotides: OMG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8P2K|1|B5|U|4209
8P2K|1|B5|A|4210
8P2K|1|B5|U|4211
8P2K|1|B5|C|4212
*
8P2K|1|B5|G|4237
8P2K|1|B5|U|4238
8P2K|1|B5|U|4239
8P2K|1|B5|OMG|4240
8P2K|1|B5|G|4241
*
8P2K|1|B5|C|4251
8P2K|1|B5|C|4252
8P2K|1|B5|A|4253
8P2K|1|B5|C|4254
8P2K|1|B5|U|4255
8P2K|1|B5|A|4256
8P2K|1|B5|A|4257
8P2K|1|B5|U|4258
8P2K|1|B5|A|4259

Current chains

Chain B5

28S rRNA

Nearby chains

Chain BB

Ribosomal protein L3

Chain BV

Ribosomal protein L23