J3_8P2K_025

3D structure

PDB id

8P2K (explore in PDB, NAKB, or RNA 3D Hub)

Description

Ternary complex of translating ribosome, NAC and METAP1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

AGAUUAAG*CGCGC(A2M)AAU*(A2M)GU

Length

20 nucleotides

Bulged bases

8P2K|1|A2|A|46

QA status

Modified nucleotides: A2M

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8P2K_025 not in the Motif Atlas

Homologous match to J3_8P9A_069

Geometric discrepancy: 0.0782

The information below is about J3_8P9A_069

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_63856.1

Basepair signature

cWW-cWW-cSW-F-cWW-F-tHH-F-cWW-F-F-F-F

Number of instances in this motif group

5

Unit IDs

8P2K|1|A2|A|40
8P2K|1|A2|G|41
8P2K|1|A2|A|42
8P2K|1|A2|U|43
8P2K|1|A2|U|44
8P2K|1|A2|A|45
8P2K|1|A2|A|46
8P2K|1|A2|G|47
*
8P2K|1|A2|C|480
8P2K|1|A2|G|481
8P2K|1|A2|C|482
8P2K|1|A2|G|483
8P2K|1|A2|C|484
8P2K|1|A2|A2M|485
8P2K|1|A2|A|486
8P2K|1|A2|A|487
8P2K|1|A2|U|488
*
8P2K|1|A2|A2M|513
8P2K|1|A2|G|514
8P2K|1|A2|U|515

Current chains

Chain A2

18s rRNA

Nearby chains

Chain Ai

40S ribosomal protein S9

Chain Aw

40S ribosomal protein S23