J3_8P2K_035
3D structure
- PDB id
- 8P2K (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Ternary complex of translating ribosome, NAC and METAP1
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- UUGAAAAG*CG*CA
- Length
- 12 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8P2K_035 not in the Motif Atlas
- Geometric match to J3_8C3A_048
- Geometric discrepancy: 0.0843
- The information below is about J3_8C3A_048
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_69021.1
- Basepair signature
- cWW-tWH-cWW-tSH-F-cWW-F
- Number of instances in this motif group
- 7
Unit IDs
8P2K|1|B5|U|380
8P2K|1|B5|U|381
8P2K|1|B5|G|382
8P2K|1|B5|A|383
8P2K|1|B5|A|384
8P2K|1|B5|A|385
8P2K|1|B5|A|386
8P2K|1|B5|G|387
*
8P2K|1|B5|C|414
8P2K|1|B5|G|415
*
8P2K|1|B8|C|19
8P2K|1|B8|A|20
Current chains
- Chain B5
- 28S rRNA
- Chain B8
- 5.8S rRNA
Nearby chains
- Chain BC
- 60S ribosomal protein L4
- Chain BY
- Ribosomal protein L26
- Chain Bl
- 60S ribosomal protein L39-like
Coloring options: