J3_8P2K_036

3D structure

PDB id

8P2K (explore in PDB, NAKB, or RNA 3D Hub)

Description

Ternary complex of translating ribosome, NAC and METAP1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

UUGAAAAGAAC*GAGUUCAAGAGGGCG*CA

Length

28 nucleotides

Bulged bases

8P2K|1|B5|G|409, 8P2K|1|B5|G|413

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8P2K_036 not in the Motif Atlas

Homologous match to J3_8C3A_049

Geometric discrepancy: 0.2945

The information below is about J3_8C3A_049

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_91149.1

Basepair signature

cWW-cWS-tSH-F-tWH-cSS-cWW-tSS-tSH-tSH-tWW-tHH-tWH-tWW-F-F-cSS-F-cWW-cWW

Number of instances in this motif group

6

Unit IDs

8P2K|1|B5|U|380
8P2K|1|B5|U|381
8P2K|1|B5|G|382
8P2K|1|B5|A|383
8P2K|1|B5|A|384
8P2K|1|B5|A|385
8P2K|1|B5|A|386
8P2K|1|B5|G|387
8P2K|1|B5|A|388
8P2K|1|B5|A|389
8P2K|1|B5|C|390
*
8P2K|1|B5|G|401
8P2K|1|B5|A|402
8P2K|1|B5|G|403
8P2K|1|B5|U|404
8P2K|1|B5|U|405
8P2K|1|B5|C|406
8P2K|1|B5|A|407
8P2K|1|B5|A|408
8P2K|1|B5|G|409
8P2K|1|B5|A|410
8P2K|1|B5|G|411
8P2K|1|B5|G|412
8P2K|1|B5|G|413
8P2K|1|B5|C|414
8P2K|1|B5|G|415
*
8P2K|1|B8|C|19
8P2K|1|B8|A|20

Current chains

Chain B5

28S rRNA

Chain B8

5.8S rRNA

Nearby chains

Chain BC

60S ribosomal protein L4

Chain BK

Glucose-6-phosphate isomerase

Chain BP

uL22

Chain BY

Ribosomal protein L26

Chain Bl

60S ribosomal protein L39-like

Chain Na

Nascent polypeptide-associated complex subunit alpha