J3_8P2K_038
3D structure
- PDB id
- 8P2K (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Ternary complex of translating ribosome, NAC and METAP1
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- UU*AGAAG*CGUGGA
- Length
- 13 nucleotides
- Bulged bases
- 8P2K|1|B5|A|1744, 8P2K|1|B5|U|1773
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8P2K_038 not in the Motif Atlas
- Homologous match to J3_8P9A_051
- Geometric discrepancy: 0.5334
- The information below is about J3_8P9A_051
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_84137.1
- Basepair signature
- cWW-cWW-cHW-F-cSS-F-cWW
- Number of instances in this motif group
- 4
Unit IDs
8P2K|1|B5|U|1665
8P2K|1|B5|U|1666
*
8P2K|1|B5|A|1741
8P2K|1|B5|G|1742
8P2K|1|B5|A|1743
8P2K|1|B5|A|1744
8P2K|1|B5|G|1745
*
8P2K|1|B5|C|1771
8P2K|1|B5|G|1772
8P2K|1|B5|U|1773
8P2K|1|B5|G|1774
8P2K|1|B5|G|1775
8P2K|1|B5|A|1776
Current chains
- Chain B5
- 28S rRNA
Nearby chains
- Chain BF
- Ribosomal Protein uL30
- Chain BT
- 60S ribosomal protein L21
- Chain Bb
- 60S ribosomal protein L29
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