J3_8P2K_044

3D structure

PDB id

8P2K (explore in PDB, NAKB, or RNA 3D Hub)

Description

Ternary complex of translating ribosome, NAC and METAP1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

UAUC*GUU*ACUAAUA

Length

14 nucleotides

Bulged bases

8P2K|1|B5|A|4210, 8P2K|1|B5|U|4211

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8P2K_044 not in the Motif Atlas

Homologous match to J3_8P9A_063

Geometric discrepancy: 0.0962

The information below is about J3_8P9A_063

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_44047.1

Basepair signature

cWW-cWH-cWW-cSS-tWW-tSS-F-cWW-F

Number of instances in this motif group

4

Unit IDs

8P2K|1|B5|U|4209
8P2K|1|B5|A|4210
8P2K|1|B5|U|4211
8P2K|1|B5|C|4212
*
8P2K|1|B5|G|4237
8P2K|1|B5|U|4238
8P2K|1|B5|U|4239
*
8P2K|1|B5|A|4253
8P2K|1|B5|C|4254
8P2K|1|B5|U|4255
8P2K|1|B5|A|4256
8P2K|1|B5|A|4257
8P2K|1|B5|U|4258
8P2K|1|B5|A|4259

Current chains

Chain B5

28S rRNA

Nearby chains

Chain BB

Ribosomal protein L3

Chain BV

Ribosomal protein L23