J3_8P2K_045

3D structure

PDB id

8P2K (explore in PDB, NAKB, or RNA 3D Hub)

Description

Ternary complex of translating ribosome, NAC and METAP1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GUUG*CCUUC*GCACCGCACGUUC

Length

22 nucleotides

Bulged bases

8P2K|1|B5|U|4621, 8P2K|1|B5|A|4677, 8P2K|1|B5|C|4679, 8P2K|1|B5|A|4682, 8P2K|1|B5|C|4683

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8P2K|1|B5|G|4498
8P2K|1|B5|U|4499
8P2K|1|B5|U|4500
8P2K|1|B5|G|4501
*
8P2K|1|B5|C|4618
8P2K|1|B5|C|4619
8P2K|1|B5|U|4620
8P2K|1|B5|U|4621
8P2K|1|B5|C|4622
*
8P2K|1|B5|G|4675
8P2K|1|B5|C|4676
8P2K|1|B5|A|4677
8P2K|1|B5|C|4678
8P2K|1|B5|C|4679
8P2K|1|B5|G|4680
8P2K|1|B5|C|4681
8P2K|1|B5|A|4682
8P2K|1|B5|C|4683
8P2K|1|B5|G|4684
8P2K|1|B5|U|4685
8P2K|1|B5|U|4686
8P2K|1|B5|C|4687

Current chains

Chain B5

28S rRNA

Nearby chains

Chain BE

60S ribosomal protein L6

Chain BM

60S ribosomal protein L14

Chain BO

60S ribosomal protein L13a

Chain Bf

60S ribosomal protein L35a