J3_8P2K_049

3D structure

PDB id

8P2K (explore in PDB, NAKB, or RNA 3D Hub)

Description

Ternary complex of translating ribosome, NAC and METAP1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GAC*GCUAAGG*CAC

Length

13 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8P2K_049 not in the Motif Atlas

Homologous match to J3_8P9A_052

Geometric discrepancy: 0.2149

The information below is about J3_8P9A_052

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_37832.1

Basepair signature

cWW-tSS-cSS-tSH-cWW-cWW-tWW-F-F

Number of instances in this motif group

5

Unit IDs

8P2K|1|B5|G|1908
8P2K|1|B5|A|1909
8P2K|1|B5|C|1910
*
8P2K|1|B5|G|1934
8P2K|1|B5|C|1935
8P2K|1|B5|U|1936
8P2K|1|B5|A|1937
8P2K|1|B5|A|1938
8P2K|1|B5|G|1939
8P2K|1|B5|G|1940
*
8P2K|1|B5|C|1955
8P2K|1|B5|A|1956
8P2K|1|B5|C|1957

Current chains

Chain B5

28S rRNA

Nearby chains

Chain Bs

60S acidic ribosomal protein P0

Chain Bt

60S ribosomal protein L12