J3_8P4V_017
3D structure
- PDB id
- 8P4V (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 80S yeast ribosome in complex with HaterumaimideQ
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.16 Å
Loop
- Sequence
- AGCUG*CACGUUCUAGCAUUCAAG*UGAU
- Length
- 27 nucleotides
- Bulged bases
- 8P4V|1|1|G|2549, 8P4V|1|1|U|2550, 8P4V|1|1|U|2551, 8P4V|1|1|C|2552, 8P4V|1|1|U|2553, 8P4V|1|1|A|2554, 8P4V|1|1|C|2560
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
8P4V|1|1|A|2529
8P4V|1|1|G|2530
8P4V|1|1|C|2531
8P4V|1|1|U|2532
8P4V|1|1|G|2533
*
8P4V|1|1|C|2546
8P4V|1|1|A|2547
8P4V|1|1|C|2548
8P4V|1|1|G|2549
8P4V|1|1|U|2550
8P4V|1|1|U|2551
8P4V|1|1|C|2552
8P4V|1|1|U|2553
8P4V|1|1|A|2554
8P4V|1|1|G|2555
8P4V|1|1|C|2556
8P4V|1|1|A|2557
8P4V|1|1|U|2558
8P4V|1|1|U|2559
8P4V|1|1|C|2560
8P4V|1|1|A|2561
8P4V|1|1|A|2562
8P4V|1|1|G|2563
*
8P4V|1|1|U|2578
8P4V|1|1|G|2579
8P4V|1|1|A|2580
8P4V|1|1|U|2581
Current chains
- Chain 1
- 25S ribosomal RNA
Nearby chains
- Chain 8
- 60S ribosomal protein L25
- Chain AA
- 60S ribosomal protein L27-A
- Chain AD
- 60S ribosomal protein L30
- Chain AH
- 60S ribosomal protein L34-A
- Chain AQ
- 60S ribosomal protein L43-A
- Chain j
- 60S ribosomal protein L2-A
- Chain p
- 60S ribosomal protein L8-A
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