J3_8P4V_029
3D structure
- PDB id
- 8P4V (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 80S yeast ribosome in complex with HaterumaimideQ
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.16 Å
Loop
- Sequence
- AGAG*CAG*UCGAAU
- Length
- 13 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8P4V_029 not in the Motif Atlas
- Homologous match to J3_8P9A_073
- Geometric discrepancy: 0.0972
- The information below is about J3_8P9A_073
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_97642.1
- Basepair signature
- cWW-tSH-F-F-cWW-F-tWW-cWW
- Number of instances in this motif group
- 2
Unit IDs
8P4V|1|A|A|760
8P4V|1|A|G|761
8P4V|1|A|A|762
8P4V|1|A|G|763
*
8P4V|1|A|C|773
8P4V|1|A|A|774
8P4V|1|A|G|775
*
8P4V|1|A|U|785
8P4V|1|A|C|786
8P4V|1|A|G|787
8P4V|1|A|A|788
8P4V|1|A|A|789
8P4V|1|A|U|790
Current chains
- Chain A
- 18S ribosomal RNA
Nearby chains
- Chain F
- 40S ribosomal protein S4-A
- Chain K
- 40S ribosomal protein S9-A
- Chain Z
- 40S ribosomal protein S24-A
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