J3_8P4V_046
3D structure
- PDB id
- 8P4V (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 80S yeast ribosome in complex with HaterumaimideQ
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.16 Å
Loop
- Sequence
- AUGAAAAGAAC*GAGUGAAAAAGUACG*CU
- Length
- 28 nucleotides
- Bulged bases
- 8P4V|1|AR|A|398, 8P4V|1|AR|A|402
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8P4V_046 not in the Motif Atlas
- Homologous match to J3_8P9A_047
- Geometric discrepancy: 0.0359
- The information below is about J3_8P9A_047
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_92134.2
- Basepair signature
- cWW-cWW-cWW-F-tWH-cSS-tSS-tSH-tSH-tWW-tHH-tWH-tWW-F-F-cSS-cSW-F-tHS-cWW
- Number of instances in this motif group
- 6
Unit IDs
8P4V|1|AR|A|369
8P4V|1|AR|U|370
8P4V|1|AR|G|371
8P4V|1|AR|A|372
8P4V|1|AR|A|373
8P4V|1|AR|A|374
8P4V|1|AR|A|375
8P4V|1|AR|G|376
8P4V|1|AR|A|377
8P4V|1|AR|A|378
8P4V|1|AR|C|379
*
8P4V|1|AR|G|390
8P4V|1|AR|A|391
8P4V|1|AR|G|392
8P4V|1|AR|U|393
8P4V|1|AR|G|394
8P4V|1|AR|A|395
8P4V|1|AR|A|396
8P4V|1|AR|A|397
8P4V|1|AR|A|398
8P4V|1|AR|A|399
8P4V|1|AR|G|400
8P4V|1|AR|U|401
8P4V|1|AR|A|402
8P4V|1|AR|C|403
8P4V|1|AR|G|404
*
8P4V|1|AT|C|19
8P4V|1|AT|U|20
Current chains
- Chain AR
- 25S ribosomal RNA
- Chain AT
- 5.8S ribosomal RNA
Nearby chains
- Chain CF
- 60S ribosomal protein L4-A
- Chain CR
- 60S ribosomal protein L17-A
- Chain DA
- 60S ribosomal protein L26-A
- Chain DN
- 60S ribosomal protein L39
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