J3_8P4V_070

3D structure

PDB id

8P4V (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S yeast ribosome in complex with HaterumaimideQ

Experimental method

X-RAY DIFFRACTION

Resolution

3.16 Å

Loop

Sequence

AGAG*CAG*UCGAAU

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8P4V_070 not in the Motif Atlas

Homologous match to J3_8P9A_073

Geometric discrepancy: 0.0477

The information below is about J3_8P9A_073

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_97642.1

Basepair signature

cWW-tSH-F-F-cWW-F-tWW-cWW

Number of instances in this motif group

2

Unit IDs

8P4V|1|sR|A|760
8P4V|1|sR|G|761
8P4V|1|sR|A|762
8P4V|1|sR|G|763
*
8P4V|1|sR|C|773
8P4V|1|sR|A|774
8P4V|1|sR|G|775
*
8P4V|1|sR|U|785
8P4V|1|sR|C|786
8P4V|1|sR|G|787
8P4V|1|sR|A|788
8P4V|1|sR|A|789
8P4V|1|sR|U|790

Current chains

Chain sR

18S ribosomal RNA

Nearby chains

Chain d4

40S ribosomal protein S24-A

Chain s4

40S ribosomal protein S4-A

Chain s9

40S ribosomal protein S9-A