J3_8P85_006
3D structure
- PDB id
- 8P85 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 80S yeast ribosome in complex with Fluorolissoclimide
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.9 Å
Loop
- Sequence
- AUGAAAAGAAC*GAGUGAAAAAGUACG*CU
- Length
- 28 nucleotides
- Bulged bases
- 8P85|1|1|A|398, 8P85|1|1|A|402
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8P85_006 not in the Motif Atlas
- Geometric match to J3_8P9A_047
- Geometric discrepancy: 0.0459
- The information below is about J3_8P9A_047
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_17917.1
- Basepair signature
- cWW-tWH-cSS-cWW-tSH-tHH-cWW-F-F-tWW-tSS-cSS-tWW-tSH-tWH-cSW-F-tHS-cWW-F
- Number of instances in this motif group
- 9
Unit IDs
8P85|1|1|A|369
8P85|1|1|U|370
8P85|1|1|G|371
8P85|1|1|A|372
8P85|1|1|A|373
8P85|1|1|A|374
8P85|1|1|A|375
8P85|1|1|G|376
8P85|1|1|A|377
8P85|1|1|A|378
8P85|1|1|C|379
*
8P85|1|1|G|390
8P85|1|1|A|391
8P85|1|1|G|392
8P85|1|1|U|393
8P85|1|1|G|394
8P85|1|1|A|395
8P85|1|1|A|396
8P85|1|1|A|397
8P85|1|1|A|398
8P85|1|1|A|399
8P85|1|1|G|400
8P85|1|1|U|401
8P85|1|1|A|402
8P85|1|1|C|403
8P85|1|1|G|404
*
8P85|1|4|C|19
8P85|1|4|U|20
Current chains
- Chain 1
- 25S ribosomal RNA
- Chain 4
- 5.8S ribosomal RNA
Nearby chains
- Chain 9
- 60S ribosomal protein L26-A
- Chain AM
- 60S ribosomal protein L39
- Chain l
- 60S ribosomal protein L4-A
- Chain x
- 60S ribosomal protein L17-A
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