J3_8P85_012
3D structure
- PDB id
- 8P85 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 80S yeast ribosome in complex with Fluorolissoclimide
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.9 Å
Loop
- Sequence
- GAAA*UGAUAAC*GUC
- Length
- 14 nucleotides
- Bulged bases
- 8P85|1|1|U|1840, 8P85|1|1|A|1841
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8P85_012 not in the Motif Atlas
- Geometric match to J3_8P9A_054
- Geometric discrepancy: 0.0522
- The information below is about J3_8P9A_054
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_76012.1
- Basepair signature
- cWW-F-tHW-tHS-tWW-cWW-cWW-F
- Number of instances in this motif group
- 5
Unit IDs
8P85|1|1|G|1488
8P85|1|1|A|1489
8P85|1|1|A|1490
8P85|1|1|A|1491
*
8P85|1|1|U|1837
8P85|1|1|G|1838
8P85|1|1|A|1839
8P85|1|1|U|1840
8P85|1|1|A|1841
8P85|1|1|A|1842
8P85|1|1|C|1843
*
8P85|1|1|G|1852
8P85|1|1|U|1853
8P85|1|1|C|1854
Current chains
- Chain 1
- 25S ribosomal RNA
Nearby chains
- Chain 4
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain AH
- 60S ribosomal protein L34-A
- Chain AK
- 60S ribosomal protein L37-A
- Chain AM
- 60S ribosomal protein L39
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