J3_8P85_020
3D structure
- PDB id
- 8P85 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 80S yeast ribosome in complex with Fluorolissoclimide
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.9 Å
Loop
- Sequence
- CUC*GAA*UAAAAG
- Length
- 12 nucleotides
- Bulged bases
- 8P85|1|1|A|2703, 8P85|1|1|A|2705
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8P85_020 not in the Motif Atlas
- Geometric match to J3_8P9A_062
- Geometric discrepancy: 0.0513
- The information below is about J3_8P9A_062
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_05327.1
- Basepair signature
- cWW-tWH-tWW-cWW-F-cWW
- Number of instances in this motif group
- 10
Unit IDs
8P85|1|1|C|2664
8P85|1|1|U|2665
8P85|1|1|C|2666
*
8P85|1|1|G|2690
8P85|1|1|A|2691
8P85|1|1|A|2692
*
8P85|1|1|U|2701
8P85|1|1|A|2702
8P85|1|1|A|2703
8P85|1|1|A|2704
8P85|1|1|A|2705
8P85|1|1|G|2706
Current chains
- Chain 1
- 25S ribosomal RNA
Nearby chains
- Chain 2
- 60S ribosomal protein L21-A
- Chain 3
- 5S ribosomal RNA; 5S rRNA
- Chain i
- Suppressor protein STM1
- Chain m
- 60S ribosomal protein L5
- Chain s
- Large ribosomal subunit protein uL5B
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