J3_8P85_026

3D structure

PDB id

8P85 (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S yeast ribosome in complex with Fluorolissoclimide

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

AG*CGCAAAU*AGU

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8P85_026 not in the Motif Atlas

Geometric match to J3_8P9A_068

Geometric discrepancy: 0.0779

The information below is about J3_8P9A_068

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_58657.1

Basepair signature

cWW-cWW-cSW-cWW-F-F-F-F

Number of instances in this motif group

5

Unit IDs

8P85|1|A|A|41
8P85|1|A|G|42
*
8P85|1|A|C|433
8P85|1|A|G|434
8P85|1|A|C|435
8P85|1|A|A|436
8P85|1|A|A|437
8P85|1|A|A|438
8P85|1|A|U|439
*
8P85|1|A|A|464
8P85|1|A|G|465
8P85|1|A|U|466

Current chains

Chain A

16S ribosomal RNA

Nearby chains

Chain K

40S ribosomal protein S9-A

Chain Y

40S ribosomal protein S23-A