J3_8P85_035
3D structure
- PDB id
- 8P85 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 80S yeast ribosome in complex with Fluorolissoclimide
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.9 Å
Loop
- Sequence
- CCAGAC*GGGUG*UUAGACG
- Length
- 18 nucleotides
- Bulged bases
- 8P85|1|A|A|1217, 8P85|1|A|G|1445, 8P85|1|A|C|1447
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8P85_035 not in the Motif Atlas
- Geometric match to J3_8CRE_081
- Geometric discrepancy: 0.1142
- The information below is about J3_8CRE_081
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_87797.2
- Basepair signature
- cWW-tWH-F-F-tHS-cWW-cWW-cWW-F
- Number of instances in this motif group
- 3
Unit IDs
8P85|1|A|C|1215
8P85|1|A|C|1216
8P85|1|A|A|1217
8P85|1|A|G|1218
8P85|1|A|A|1219
8P85|1|A|C|1220
*
8P85|1|A|G|1263
8P85|1|A|G|1264
8P85|1|A|G|1265
8P85|1|A|U|1266
8P85|1|A|G|1267
*
8P85|1|A|U|1442
8P85|1|A|U|1443
8P85|1|A|A|1444
8P85|1|A|G|1445
8P85|1|A|A|1446
8P85|1|A|C|1447
8P85|1|A|G|1448
Current chains
- Chain A
- 16S ribosomal RNA
Nearby chains
- Chain L
- Small ribosomal subunit protein eS10A,Small ribosomal subunit protein eS10A,40S ribosomal protein S10-A
- Chain e
- Small ribosomal subunit protein uS14A
- Chain g
- Ubiquitin
Coloring options: