J3_8P85_047
3D structure
- PDB id
- 8P85 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 80S yeast ribosome in complex with Fluorolissoclimide
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.9 Å
Loop
- Sequence
- UC*GAGGACUGCG*CAAGGA
- Length
- 18 nucleotides
- Bulged bases
- 8P85|1|AR|A|607
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8P85_047 not in the Motif Atlas
- Geometric match to J3_8P9A_048
- Geometric discrepancy: 0.0246
- The information below is about J3_8P9A_048
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_86133.1
- Basepair signature
- cWW-cWW-F-F-F-cWS-F-cWW-F-F-F-F-F
- Number of instances in this motif group
- 3
Unit IDs
8P85|1|AR|U|502
8P85|1|AR|C|503
*
8P85|1|AR|G|588
8P85|1|AR|A|589
8P85|1|AR|G|590
8P85|1|AR|G|591
8P85|1|AR|A|592
8P85|1|AR|C|593
8P85|1|AR|U|594
8P85|1|AR|G|595
8P85|1|AR|C|596
8P85|1|AR|G|597
*
8P85|1|AR|C|606
8P85|1|AR|A|607
8P85|1|AR|A|608
8P85|1|AR|G|609
8P85|1|AR|G|610
8P85|1|AR|A|611
Current chains
- Chain AR
- 25S ribosomal RNA
Nearby chains
- Chain CF
- 60S ribosomal protein L4-A
- Chain CH
- 60S ribosomal protein L6-A
- Chain CI
- 60S ribosomal protein L7-A
- Chain DG
- 60S ribosomal protein L32
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