J3_8P85_055
3D structure
- PDB id
- 8P85 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 80S yeast ribosome in complex with Fluorolissoclimide
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.9 Å
Loop
- Sequence
- AGAUGG*CGUUUCAAAGGCC*GCCACCAU
- Length
- 27 nucleotides
- Bulged bases
- 8P85|1|AR|C|1556, 8P85|1|AR|A|1558, 8P85|1|AR|C|1581
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8P85_055 not in the Motif Atlas
- Geometric match to J3_8P9A_056
- Geometric discrepancy: 0.0338
- The information below is about J3_8P9A_056
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_38098.1
- Basepair signature
- cWW-tSH-tWH-tWW-F-tHS-F-cWW-F-F-F-F-F-F-cWW-F-F-F
- Number of instances in this motif group
- 1
Unit IDs
8P85|1|AR|A|1537
8P85|1|AR|G|1538
8P85|1|AR|A|1539
8P85|1|AR|U|1540
8P85|1|AR|G|1541
8P85|1|AR|G|1542
*
8P85|1|AR|C|1551
8P85|1|AR|G|1552
8P85|1|AR|U|1553
8P85|1|AR|U|1554
8P85|1|AR|U|1555
8P85|1|AR|C|1556
8P85|1|AR|A|1557
8P85|1|AR|A|1558
8P85|1|AR|A|1559
8P85|1|AR|G|1560
8P85|1|AR|G|1561
8P85|1|AR|C|1562
8P85|1|AR|C|1563
*
8P85|1|AR|G|1577
8P85|1|AR|C|1578
8P85|1|AR|C|1579
8P85|1|AR|A|1580
8P85|1|AR|C|1581
8P85|1|AR|C|1582
8P85|1|AR|A|1583
8P85|1|AR|U|1584
Current chains
- Chain AR
- 25S ribosomal RNA
Nearby chains
- Chain AT
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain CD
- 60S ribosomal protein L2-A
- Chain CJ
- 60S ribosomal protein L8-A
- Chain CP
- 60S ribosomal protein L15-A
- Chain CZ
- 60S ribosomal protein L25
- Chain DL
- 60S ribosomal protein L37-A
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