J3_8P85_070
3D structure
- PDB id
- 8P85 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 80S yeast ribosome in complex with Fluorolissoclimide
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.9 Å
Loop
- Sequence
- UGA*UAAUA*UA
- Length
- 10 nucleotides
- Bulged bases
- 8P85|1|sR|U|864
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8P85_070 not in the Motif Atlas
- Geometric match to J3_8P9A_071
- Geometric discrepancy: 0.0397
- The information below is about J3_8P9A_071
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_01633.1
- Basepair signature
- cWW-F-cWW-cWW-F
- Number of instances in this motif group
- 4
Unit IDs
8P85|1|sR|U|633
8P85|1|sR|G|634
8P85|1|sR|A|635
*
8P85|1|sR|U|861
8P85|1|sR|A|862
8P85|1|sR|A|863
8P85|1|sR|U|864
8P85|1|sR|A|865
*
8P85|1|sR|U|965
8P85|1|sR|A|966
Current chains
- Chain sR
- 16S ribosomal RNA
Nearby chains
- Chain c1
- 40S ribosomal protein S11-A
- Chain c3
- 40S ribosomal protein S13
- Chain d2
- 40S ribosomal protein S22-A
- Chain d3
- 40S ribosomal protein S23-A
- Chain d7
- 40S ribosomal protein S27-A
- Chain s7
- 40S ribosomal protein S7-A
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