J3_8P85_080

3D structure

PDB id

8P85 (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S yeast ribosome in complex with Fluorolissoclimide

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

UG*UGUC*GAUAA

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8P85_080 not in the Motif Atlas

Geometric match to J3_8P9A_081

Geometric discrepancy: 0.0477

The information below is about J3_8P9A_081

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_76043.4

Basepair signature

cWW-cWW-tSS-F-F-F-F-cWW

Number of instances in this motif group

3

Unit IDs

8P85|1|sR|U|1293
8P85|1|sR|G|1294
*
8P85|1|sR|U|1303
8P85|1|sR|G|1304
8P85|1|sR|U|1305
8P85|1|sR|C|1306
*
8P85|1|sR|G|1318
8P85|1|sR|A|1319
8P85|1|sR|U|1320
8P85|1|sR|A|1321
8P85|1|sR|A|1322

Current chains

Chain sR

16S ribosomal RNA

Nearby chains

Chain c7

40S ribosomal protein S17-A

Chain s0

40S ribosomal protein S0-A

Chain s2

40S ribosomal protein S2