J3_8P8M_001
3D structure
- PDB id
- 8P8M (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Yeast 60S ribosomal subunit, RPL39 deletion
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.66 Å
Loop
- Sequence
- CAAAUUUGAAA*UAAUUUGGAG*CGAAG
- Length
- 26 nucleotides
- Bulged bases
- 8P8M|1|A|G|156
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8P8M_001 not in the Motif Atlas
- Homologous match to J3_8C3A_001
- Geometric discrepancy: 0.0817
- The information below is about J3_8C3A_001
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_88489.1
- Basepair signature
- cWW-F-F-F-F-F-F-F-F-tWH-F-F-tHS-cWW-cWW-F-F
- Number of instances in this motif group
- 2
Unit IDs
8P8M|1|A|C|113
8P8M|1|A|A|114
8P8M|1|A|A|115
8P8M|1|A|A|116
8P8M|1|A|U|117
8P8M|1|A|U|118
8P8M|1|A|U|119
8P8M|1|A|G|120
8P8M|1|A|A|121
8P8M|1|A|A|122
8P8M|1|A|A|123
*
8P8M|1|A|U|149
8P8M|1|A|A|150
8P8M|1|A|A|151
8P8M|1|A|U|152
8P8M|1|A|U|153
8P8M|1|A|U|154
8P8M|1|A|G|155
8P8M|1|A|G|156
8P8M|1|A|A|157
8P8M|1|A|G|158
*
8P8M|1|A|C|263
8P8M|1|A|G|264
8P8M|1|A|A|265
8P8M|1|A|A|266
8P8M|1|A|G|267
Current chains
- Chain A
- 25S rRNA
Nearby chains
- Chain JT
- 60S ribosomal protein L13-A
- Chain JV
- 60S ribosomal protein L15-A
- Chain LL
- 60S ribosomal protein L8-A
- Chain RH
- 60S ribosomal protein L35-A
- Chain RI
- 60S ribosomal protein L36-A
Coloring options: