J3_8P8M_014
3D structure
- PDB id
- 8P8M (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Yeast 60S ribosomal subunit, RPL39 deletion
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.66 Å
Loop
- Sequence
- CGAUAGCGAACAAGUAC*GGAAAG*CUUG
- Length
- 27 nucleotides
- Bulged bases
- 8P8M|1|A|U|343, 8P8M|1|A|A|351, 8P8M|1|LD|U|23
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8P8M_014 not in the Motif Atlas
- Homologous match to J3_8P9A_045
- Geometric discrepancy: 0.08
- The information below is about J3_8P9A_045
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_07616.1
- Basepair signature
- cWW-cSS-tSS-tSW-tHW-cWW-tWH-F-F-tHH-tSS-tWH-F-tHS-cWW-F-cSH
- Number of instances in this motif group
- 10
Unit IDs
8P8M|1|A|C|340
8P8M|1|A|G|341
8P8M|1|A|A|342
8P8M|1|A|U|343
8P8M|1|A|A|344
8P8M|1|A|G|345
8P8M|1|A|C|346
8P8M|1|A|G|347
8P8M|1|A|A|348
8P8M|1|A|A|349
8P8M|1|A|C|350
8P8M|1|A|A|351
8P8M|1|A|A|352
8P8M|1|A|G|353
8P8M|1|A|U|354
8P8M|1|A|A|355
8P8M|1|A|C|356
*
8P8M|1|A|G|363
8P8M|1|A|G|364
8P8M|1|A|A|365
8P8M|1|A|A|366
8P8M|1|A|A|367
8P8M|1|A|G|368
*
8P8M|1|LD|C|21
8P8M|1|LD|U|22
8P8M|1|LD|U|23
8P8M|1|LD|G|24
Current chains
- Chain A
- 25S rRNA
- Chain LD
- 5.8S rRNA
Nearby chains
- Chain LH
- 60S ribosomal protein L4-A
- Chain QY
- 60S ribosomal protein L26-A
- Chain RJ
- 60S ribosomal protein L37-A
Coloring options: