J3_8P8M_017
3D structure
- PDB id
- 8P8M (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Yeast 60S ribosomal subunit, RPL39 deletion
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.66 Å
Loop
- Sequence
- UC*GAGGACUGCG*CAAGGA
- Length
- 18 nucleotides
- Bulged bases
- 8P8M|1|A|A|607
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8P8M_017 not in the Motif Atlas
- Homologous match to J3_8P9A_048
- Geometric discrepancy: 0.0778
- The information below is about J3_8P9A_048
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_86133.1
- Basepair signature
- cWW-cWW-F-F-F-cWS-F-cWW-F-F-F-F-F
- Number of instances in this motif group
- 3
Unit IDs
8P8M|1|A|U|502
8P8M|1|A|C|503
*
8P8M|1|A|G|588
8P8M|1|A|A|589
8P8M|1|A|G|590
8P8M|1|A|G|591
8P8M|1|A|A|592
8P8M|1|A|C|593
8P8M|1|A|U|594
8P8M|1|A|G|595
8P8M|1|A|C|596
8P8M|1|A|G|597
*
8P8M|1|A|C|606
8P8M|1|A|A|607
8P8M|1|A|A|608
8P8M|1|A|G|609
8P8M|1|A|G|610
8P8M|1|A|A|611
Current chains
- Chain A
- 25S rRNA
Nearby chains
- Chain LH
- 60S ribosomal protein L4-A
- Chain LJ
- 60S ribosomal protein L6-A
- Chain LK
- 60S ribosomal protein L7-A
- Chain RE
- 60S ribosomal protein L32
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