J3_8P8N_022

3D structure

PDB id

8P8N (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mouse RPL39 integrated into the yeast 60S ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

2.15 Å

Loop

Sequence

AGACG*CC*GAAAAU

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8P8N_022 not in the Motif Atlas

Homologous match to J3_8P9A_058

Geometric discrepancy: 0.0774

The information below is about J3_8P9A_058

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_12393.2

Basepair signature

cWW-tSH-tHH-F-F-cWW-F-cWW

Number of instances in this motif group

3

Unit IDs

8P8N|1|A|A|1654
8P8N|1|A|G|1655
8P8N|1|A|A|1656
8P8N|1|A|C|1657
8P8N|1|A|G|1658
*
8P8N|1|A|C|1791
8P8N|1|A|C|1792
*
8P8N|1|A|G|1796
8P8N|1|A|A|1797
8P8N|1|A|A|1798
8P8N|1|A|A|1799
8P8N|1|A|A|1800
8P8N|1|A|U|1801

Current chains

Chain A

25S rRNA

Nearby chains

Chain LF

60S ribosomal protein L2-A

Chain RG

60S ribosomal protein L34-A

Chain RT

60S ribosomal protein L43-A