J3_8P8U_016
3D structure
- PDB id
- 8P8U (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Yeast 60S ribosomal subunit
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.23 Å
Loop
- Sequence
- AUGAAAAGAAC*GAGUGAAAAAGUACG*CU
- Length
- 28 nucleotides
- Bulged bases
- 8P8U|1|A|A|398, 8P8U|1|A|A|402
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8P8U_016 not in the Motif Atlas
- Homologous match to J3_8P9A_047
- Geometric discrepancy: 0.0769
- The information below is about J3_8P9A_047
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_17917.1
- Basepair signature
- cWW-tWH-cSS-cWW-tSH-tHH-cWW-F-F-tWW-tSS-cSS-tWW-tSH-tWH-cSW-F-tHS-cWW-F
- Number of instances in this motif group
- 9
Unit IDs
8P8U|1|A|A|369
8P8U|1|A|U|370
8P8U|1|A|G|371
8P8U|1|A|A|372
8P8U|1|A|A|373
8P8U|1|A|A|374
8P8U|1|A|A|375
8P8U|1|A|G|376
8P8U|1|A|A|377
8P8U|1|A|A|378
8P8U|1|A|C|379
*
8P8U|1|A|G|390
8P8U|1|A|A|391
8P8U|1|A|G|392
8P8U|1|A|U|393
8P8U|1|A|G|394
8P8U|1|A|A|395
8P8U|1|A|A|396
8P8U|1|A|A|397
8P8U|1|A|A|398
8P8U|1|A|A|399
8P8U|1|A|G|400
8P8U|1|A|U|401
8P8U|1|A|A|402
8P8U|1|A|C|403
8P8U|1|A|G|404
*
8P8U|1|LD|C|19
8P8U|1|LD|U|20
Current chains
- Chain A
- 25S rRNA
- Chain LD
- 5.8S rRNA
Nearby chains
- Chain 2
- 60S ribosomal protein L39
- Chain LH
- 60S ribosomal protein L4-A
- Chain QO
- 60S ribosomal protein L17-A
- Chain QY
- 60S ribosomal protein L26-A
Coloring options: