J3_8P9A_053

3D structure

PDB id

8P9A (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S yeast ribosome in complex with Methyllissoclimide

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

UGAAGUG*CAA*UCUA

Length

14 nucleotides

Bulged bases

8P9A|1|AR|A|1482

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_19545.1

Basepair signature

cWW-tSH-F-F-F-cWW-cWW-F

Number of instances in this motif group

4

Unit IDs

8P9A|1|AR|U|1479
8P9A|1|AR|G|1480
8P9A|1|AR|A|1481
8P9A|1|AR|A|1482
8P9A|1|AR|G|1483
8P9A|1|AR|U|1484
8P9A|1|AR|G|1485
*
8P9A|1|AR|C|1857
8P9A|1|AR|A|1858
8P9A|1|AR|A|1859
*
8P9A|1|AR|U|1871
8P9A|1|AR|C|1872
8P9A|1|AR|U|1873
8P9A|1|AR|A|1874

Current chains

Chain AR

25S ribosomal RNA

Nearby chains

Chain CT

60S ribosomal protein L19-A

Chain DI

60S ribosomal protein L34-A