J3_8PEG_020

3D structure

PDB id

8PEG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli paused disome complex (queueing 70S non-rotated closed PRE state)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

GC*GCGAAAAG*CC

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8PEG_020 not in the Motif Atlas

Geometric match to J3_8C3A_048

Geometric discrepancy: 0.1122

The information below is about J3_8C3A_048

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_69021.1

Basepair signature

cWW-tWH-cWW-tSH-F-cWW-F

Number of instances in this motif group

7

Unit IDs

8PEG|1|7|G|30
8PEG|1|7|C|31
*
8PEG|1|7|G|474
8PEG|1|7|C|475
8PEG|1|7|G|476
8PEG|1|7|A|477
8PEG|1|7|A|478
8PEG|1|7|A|479
8PEG|1|7|A|480
8PEG|1|7|G|481
*
8PEG|1|7|C|509
8PEG|1|7|C|510

Current chains

Chain 7

23S ribosomal RNA

Nearby chains

Chain t

50S ribosomal protein L20

Chain x

50S ribosomal protein L24