J3_8PEG_022
3D structure
- PDB id
- 8PEG (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Escherichia coli paused disome complex (queueing 70S non-rotated closed PRE state)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.3 Å
Loop
- Sequence
- CCUG*CGAUAGUGAACCAGUAC*GGAAAG
- Length
- 27 nucleotides
- Bulged bases
- 8PEG|1|7|U|34, 8PEG|1|7|U|448, 8PEG|1|7|C|456
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8PEG_022 not in the Motif Atlas
- Homologous match to J3_5J7L_067
- Geometric discrepancy: 0.0674
- The information below is about J3_5J7L_067
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_30040.2
- Basepair signature
- cWW-tWH-F-cWW-tSS-tHH-cSS-tWH-tSW-tHS-cWW-tWH-F-cSH-tSS-F-F
- Number of instances in this motif group
- 7
Unit IDs
8PEG|1|7|C|32
8PEG|1|7|C|33
8PEG|1|7|U|34
8PEG|1|7|G|35
*
8PEG|1|7|C|445
8PEG|1|7|G|446
8PEG|1|7|A|447
8PEG|1|7|U|448
8PEG|1|7|A|449
8PEG|1|7|G|450
8PEG|1|7|U|451
8PEG|1|7|G|452
8PEG|1|7|A|453
8PEG|1|7|A|454
8PEG|1|7|C|455
8PEG|1|7|C|456
8PEG|1|7|A|457
8PEG|1|7|G|458
8PEG|1|7|U|459
8PEG|1|7|A|460
8PEG|1|7|C|461
*
8PEG|1|7|G|468
8PEG|1|7|G|469
8PEG|1|7|A|470
8PEG|1|7|A|471
8PEG|1|7|A|472
8PEG|1|7|G|473
Current chains
- Chain 7
- 23S ribosomal RNA
Nearby chains
- Chain d
- 50S ribosomal protein L4
- Chain l
- 50S ribosomal protein L34
- Chain p
- Nascent chain
- Chain t
- 50S ribosomal protein L20
- Chain w
- 50S ribosomal protein L23
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