J3_8PFR_016
3D structure
- PDB id
- 8PFR (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Mouse RPL39L integrated into the yeast 60S ribosomal subunit
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.15 Å
Loop
- Sequence
- AUGAAAAG*CG*CU
- Length
- 12 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8PFR_016 not in the Motif Atlas
- Geometric match to J3_5TBW_002
- Geometric discrepancy: 0.0628
- The information below is about J3_5TBW_002
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_69021.1
- Basepair signature
- cWW-tWH-cWW-tSH-F-cWW-F
- Number of instances in this motif group
- 7
Unit IDs
8PFR|1|A|A|369
8PFR|1|A|U|370
8PFR|1|A|G|371
8PFR|1|A|A|372
8PFR|1|A|A|373
8PFR|1|A|A|374
8PFR|1|A|A|375
8PFR|1|A|G|376
*
8PFR|1|A|C|403
8PFR|1|A|G|404
*
8PFR|1|LD|C|19
8PFR|1|LD|U|20
Current chains
- Chain A
- 25S rRNA
- Chain LD
- 5.8S rRNA
Nearby chains
- Chain LH
- 60S ribosomal protein L4-A
- Chain QY
- 60S ribosomal protein L26-A
- Chain RN
- 60S ribosomal protein L39-like
Coloring options: