J3_8PFR_018
3D structure
- PDB id
- 8PFR (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Mouse RPL39L integrated into the yeast 60S ribosomal subunit
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.15 Å
Loop
- Sequence
- UC*GAGGACUGCG*CAAGGA
- Length
- 18 nucleotides
- Bulged bases
- 8PFR|1|A|A|607
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8PFR_018 not in the Motif Atlas
- Homologous match to J3_8P9A_048
- Geometric discrepancy: 0.0639
- The information below is about J3_8P9A_048
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_86133.1
- Basepair signature
- cWW-cWW-F-F-F-cWS-F-cWW-F-F-F-F-F
- Number of instances in this motif group
- 3
Unit IDs
8PFR|1|A|U|502
8PFR|1|A|C|503
*
8PFR|1|A|G|588
8PFR|1|A|A|589
8PFR|1|A|G|590
8PFR|1|A|G|591
8PFR|1|A|A|592
8PFR|1|A|C|593
8PFR|1|A|U|594
8PFR|1|A|G|595
8PFR|1|A|C|596
8PFR|1|A|G|597
*
8PFR|1|A|C|606
8PFR|1|A|A|607
8PFR|1|A|A|608
8PFR|1|A|G|609
8PFR|1|A|G|610
8PFR|1|A|A|611
Current chains
- Chain A
- 25S rRNA
Nearby chains
- Chain LH
- 60S ribosomal protein L4-A
- Chain LJ
- 60S ribosomal protein L6-A
- Chain LK
- 60S ribosomal protein L7-A
- Chain RE
- 60S ribosomal protein L32
Coloring options: