3D structure

PDB id
8PHJ (explore in PDB, NAKB, or RNA 3D Hub)
Description
cA4-bound Cami1 in complex with 70S ribosome
Experimental method
ELECTRON MICROSCOPY
Resolution
3.67 Å

Loop

Sequence
CUUG*CAG*CUUACG
Length
13 nucleotides
Bulged bases
8PHJ|1|A|C|1214
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_8PHJ_005 not in the Motif Atlas
Homologous match to J3_4LFB_005
Geometric discrepancy: 0.121
The information below is about J3_4LFB_005
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_82572.1
Basepair signature
cWW-tSH-tWW-F-cWW-tHW-F-F-cWW
Number of instances in this motif group
2

Unit IDs

8PHJ|1|A|C|990
8PHJ|1|A|U|991
8PHJ|1|A|U|992
8PHJ|1|A|G|993
*
8PHJ|1|A|C|1045
8PHJ|1|A|A|1046
8PHJ|1|A|G|1047
*
8PHJ|1|A|C|1210
8PHJ|1|A|U|1211
8PHJ|1|A|U|1212
8PHJ|1|A|A|1213
8PHJ|1|A|C|1214
8PHJ|1|A|G|1215

Current chains

Chain A
16S rRNA

Nearby chains

Chain N
Small ribosomal subunit protein uS14
Chain X
CRISPR-associated protein, APE2256 family
Chain Y
CRISPR-associated protein, APE2256 family

Coloring options:


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