J3_8PHJ_012
3D structure
- PDB id
- 8PHJ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- cA4-bound Cami1 in complex with 70S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.67 Å
Loop
- Sequence
- GGA*UUUAAAG*CAC
- Length
- 13 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8PHJ_012 not in the Motif Atlas
- Homologous match to J3_5J7L_040
- Geometric discrepancy: 0.1121
- The information below is about J3_5J7L_040
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_28621.5
- Basepair signature
- cWW-tSS-cSS-tSH-cWW-cWW-tWW-F-F
- Number of instances in this motif group
- 7
Unit IDs
8PHJ|1|a|G|1055
8PHJ|1|a|G|1056
8PHJ|1|a|A|1057
*
8PHJ|1|a|U|1081
8PHJ|1|a|U|1082
8PHJ|1|a|U|1083
8PHJ|1|a|A|1084
8PHJ|1|a|A|1085
8PHJ|1|a|A|1086
8PHJ|1|a|G|1087
*
8PHJ|1|a|C|1102
8PHJ|1|a|A|1103
8PHJ|1|a|C|1104
Current chains
- Chain a
- 23S rRNA (2862-MER)
Nearby chains
- Chain 3
- Large ribosomal subunit protein bL36A
- Chain 5
- Large ribosomal subunit protein uL10
- Chain 6
- Large ribosomal subunit protein uL11
Coloring options: