3D structure

PDB id
8PHJ (explore in PDB, NAKB, or RNA 3D Hub)
Description
cA4-bound Cami1 in complex with 70S ribosome
Experimental method
ELECTRON MICROSCOPY
Resolution
3.67 Å

Loop

Sequence
GGA*UUUAAAG*CAC
Length
13 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_8PHJ_012 not in the Motif Atlas
Homologous match to J3_5J7L_040
Geometric discrepancy: 0.1121
The information below is about J3_5J7L_040
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_28621.5
Basepair signature
cWW-tSS-cSS-tSH-cWW-cWW-tWW-F-F
Number of instances in this motif group
7

Unit IDs

8PHJ|1|a|G|1055
8PHJ|1|a|G|1056
8PHJ|1|a|A|1057
*
8PHJ|1|a|U|1081
8PHJ|1|a|U|1082
8PHJ|1|a|U|1083
8PHJ|1|a|A|1084
8PHJ|1|a|A|1085
8PHJ|1|a|A|1086
8PHJ|1|a|G|1087
*
8PHJ|1|a|C|1102
8PHJ|1|a|A|1103
8PHJ|1|a|C|1104

Current chains

Chain a
23S rRNA (2862-MER)

Nearby chains

Chain 3
Large ribosomal subunit protein bL36A
Chain 5
Large ribosomal subunit protein uL10
Chain 6
Large ribosomal subunit protein uL11

Coloring options:


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