J3_8PHJ_015
3D structure
- PDB id
- 8PHJ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- cA4-bound Cami1 in complex with 70S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.67 Å
Loop
- Sequence
- CUG*CUAAC*GGACAG
- Length
- 14 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8PHJ_015 not in the Motif Atlas
- Homologous match to J3_5J7L_044
- Geometric discrepancy: 0.0584
- The information below is about J3_5J7L_044
- Detailed Annotation
- Kink-turn in J3
- Broad Annotation
- No text annotation
- Motif group
- J3_89368.5
- Basepair signature
- cWW-tSH-tHW-F-cWW-tHH-cWW
- Number of instances in this motif group
- 3
Unit IDs
8PHJ|1|a|C|2091
8PHJ|1|a|U|2092
8PHJ|1|a|G|2093
*
8PHJ|1|a|C|2196
8PHJ|1|a|U|2197
8PHJ|1|a|A|2198
8PHJ|1|a|A|2199
8PHJ|1|a|C|2200
*
8PHJ|1|a|G|2223
8PHJ|1|a|G|2224
8PHJ|1|a|A|2225
8PHJ|1|a|C|2226
8PHJ|1|a|A|2227
8PHJ|1|a|G|2228
Current chains
- Chain a
- 23S rRNA (2862-MER)
Nearby chains
- Chain c
- Large ribosomal subunit protein uL2
- Chain h
- Large ribosomal subunit protein bL9
- Chain w
- Large ribosomal subunit protein bL28
Coloring options: