3D structure

PDB id
8PHJ (explore in PDB, NAKB, or RNA 3D Hub)
Description
cA4-bound Cami1 in complex with 70S ribosome
Experimental method
ELECTRON MICROSCOPY
Resolution
3.67 Å

Loop

Sequence
CUG*CUAAC*GGACAG
Length
14 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_8PHJ_015 not in the Motif Atlas
Homologous match to J3_5J7L_044
Geometric discrepancy: 0.0584
The information below is about J3_5J7L_044
Detailed Annotation
Kink-turn in J3
Broad Annotation
No text annotation
Motif group
J3_89368.5
Basepair signature
cWW-tSH-tHW-F-cWW-tHH-cWW
Number of instances in this motif group
3

Unit IDs

8PHJ|1|a|C|2091
8PHJ|1|a|U|2092
8PHJ|1|a|G|2093
*
8PHJ|1|a|C|2196
8PHJ|1|a|U|2197
8PHJ|1|a|A|2198
8PHJ|1|a|A|2199
8PHJ|1|a|C|2200
*
8PHJ|1|a|G|2223
8PHJ|1|a|G|2224
8PHJ|1|a|A|2225
8PHJ|1|a|C|2226
8PHJ|1|a|A|2227
8PHJ|1|a|G|2228

Current chains

Chain a
23S rRNA (2862-MER)

Nearby chains

Chain c
Large ribosomal subunit protein uL2
Chain h
Large ribosomal subunit protein bL9
Chain w
Large ribosomal subunit protein bL28

Coloring options:


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