3D structure

PDB id
8PHJ (explore in PDB, NAKB, or RNA 3D Hub)
Description
cA4-bound Cami1 in complex with 70S ribosome
Experimental method
ELECTRON MICROSCOPY
Resolution
3.67 Å

Loop

Sequence
GAAC*GUUGAU*AAUGAAC
Length
17 nucleotides
Bulged bases
8PHJ|1|a|U|2833, 8PHJ|1|a|A|2835
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_8PHJ_018 not in the Motif Atlas
Homologous match to J3_5J7L_048
Geometric discrepancy: 0.1427
The information below is about J3_5J7L_048
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_64069.1
Basepair signature
cWW-tHS-F-F-F-cWW-cWW-F-F
Number of instances in this motif group
1

Unit IDs

8PHJ|1|a|G|2812
8PHJ|1|a|A|2813
8PHJ|1|a|A|2814
8PHJ|1|a|C|2815
*
8PHJ|1|a|G|2831
8PHJ|1|a|U|2832
8PHJ|1|a|U|2833
8PHJ|1|a|G|2834
8PHJ|1|a|A|2835
8PHJ|1|a|U|2836
*
8PHJ|1|a|A|2882
8PHJ|1|a|A|2883
8PHJ|1|a|U|2884
8PHJ|1|a|G|2885
8PHJ|1|a|A|2886
8PHJ|1|a|A|2887
8PHJ|1|a|C|2888

Current chains

Chain a
23S rRNA (2862-MER)

Nearby chains

Chain d
Large ribosomal subunit protein uL3
Chain m
Large ribosomal subunit protein bL17
Chain r
Large ribosomal subunit protein uL22
Chain z
Large ribosomal subunit protein bL32

Coloring options:


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