J3_8PHJ_029

3D structure

PDB id

8PHJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

cA4-bound Cami1 in complex with 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.67 Å

Loop

Sequence

GC*GCGAAAAG*CC

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8PHJ_029 not in the Motif Atlas

Geometric match to J3_5J7L_036

Geometric discrepancy: 0.0755

The information below is about J3_5J7L_036

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_60031.2

Basepair signature

cWW-cWW-cWW-tWH-tSH-F-F

Number of instances in this motif group

7

Unit IDs

8PHJ|1|a|G|30
8PHJ|1|a|C|31
*
8PHJ|1|a|G|474
8PHJ|1|a|C|475
8PHJ|1|a|G|476
8PHJ|1|a|A|477
8PHJ|1|a|A|478
8PHJ|1|a|A|479
8PHJ|1|a|A|480
8PHJ|1|a|G|481
*
8PHJ|1|a|C|509
8PHJ|1|a|C|510

Current chains

Chain a

23S rRNA (2862-MER)

Nearby chains

Chain p

Large ribosomal subunit protein bL20

Chain t

Large ribosomal subunit protein uL24