J3_8PJ2_011

3D structure

PDB id

8PJ2 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of human 48S translation initiation complex in AUG recognition state after eIF5-induced GTP hydrolysis by eIF2 (48S-2)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

AG*CGC(A2M)AAU*AGU

Length

12 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: A2M

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8PJ2_011 not in the Motif Atlas

Homologous match to J3_8C3A_082

Geometric discrepancy: 0.1041

The information below is about J3_8C3A_082

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_67856.2

Basepair signature

cWW-F-cWW-F-F-cSW-F-cWW

Number of instances in this motif group

5

Unit IDs

8PJ2|1|A|A|40
8PJ2|1|A|G|41
*
8PJ2|1|A|C|481
8PJ2|1|A|G|482
8PJ2|1|A|C|483
8PJ2|1|A|A2M|484
8PJ2|1|A|A|485
8PJ2|1|A|A|486
8PJ2|1|A|U|487
*
8PJ2|1|A|A|512
8PJ2|1|A|G|513
8PJ2|1|A|U|514

Current chains

Chain A

18S rRNA

Nearby chains

Chain D

40S ribosomal protein S9

Chain E

40S ribosomal protein S23