J3_8PJ4_011

3D structure

PDB id

8PJ4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of human 48S translation initiation complex after eIF5 release (48S-4)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

AG*CGC(A2M)AAU*AGU

Length

12 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: A2M

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8PJ4_011 not in the Motif Atlas

Geometric match to J3_8C3A_082

Geometric discrepancy: 0.1018

The information below is about J3_8C3A_082

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_67856.2

Basepair signature

cWW-F-cWW-F-F-cSW-F-cWW

Number of instances in this motif group

5

Unit IDs

8PJ4|1|A|A|40
8PJ4|1|A|G|41
*
8PJ4|1|A|C|481
8PJ4|1|A|G|482
8PJ4|1|A|C|483
8PJ4|1|A|A2M|484
8PJ4|1|A|A|485
8PJ4|1|A|A|486
8PJ4|1|A|U|487
*
8PJ4|1|A|A|512
8PJ4|1|A|G|513
8PJ4|1|A|U|514

Current chains

Chain A

18S rRNA

Nearby chains

Chain 0

Eukaryotic translation initiation factor 5B

Chain D

40S ribosomal protein S9

Chain E

40S ribosomal protein S23